PRDM5 - PR domain zinc finger protein 5 - human protein (Sequence)
 
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PRDM5 »  PR domain zinc finger protein 5   [ EC 2.1.1.- ]
 
Protein also known as:  PR domain-containing protein 5.
Gene name:  PRDM5
Entry whose protein(s) existence is based on evidence at protein level
extend overview
1 20 4
GENE REF ISO

Displayed isoform: Iso 1     

 
 
Isoform Iso 1   630 aaMass: 73090 Da,  pI: 9.08
MLGMYVPDRF SLKSSRVQDG MGLYTARRVR KGEKFGPFAG EKRMPEDLDE NMDYRLMWEV RGSKGEVLYI LDATNPRHSN WLRFVHEAPS QEQKNLAAIQ EGENIFYLAV EDIETDTELL IGYLDSDMEA EEEEQQIMTV IKEGEVENSR RQSTAGRKDR LGCKEDYACP QCESSFTSED ILAEHLQTLH QKPTEEKEFK CKNCGKKFPV KQALQRHVLQ CTAKSSLKES SRSFQCSVCN SSFSSASSFE QHQETCRGDA RFVCKADSCG KRLKSKDALK RHQENVHTGD PKKKLICSVC NKKCSSASSL QEHRKIHEIF DCQECMKKFI SANQLKRHMI THSEKRPYNC EICNKSFKRL DQVGAHKVIH SEDKPYKCKL CGKGFAHRNV YKNHKKTHSE ERPFQCEECK ALFRTPFSLQ RHLLIHNSER TFKCHHCDAT FKRKDTLNVH VQVVHERHKK YRCELCNKAF VTPSVLRSHK KTHTGEKEKI CPYCGQKFAS SGTLRVHIRS HTGERPYQCP YCEKGFSKND GLKMHIRTHT REKPYKCSEC SKAFSQKRGL DEHKRTHTGE KPFQCDVCDL AFSLKKMLIR HKMTHNPNRP LAECQFCHKK FTRNDYLKVH MDNIHGVADS

Keywords

Coding sequence diversity 
Alternative splicing  definition   [KW-0025]
Domain 
Repeat  definition   [KW-0677]
Zinc-finger  definition   [KW-0863]
Technical term 
Reference proteome  definition   [KW-1185]
 

Further external links

Family and domain databases
Gene3D: 3.30.160.60
InterPro: IPR013087 [ Znf C2H2/integrase DNA-bd ]
InterPro: IPR015880 [ Znf C2H2-like ]
InterPro: IPR017125 [ Znf PRDM5 ]
InterPro: IPR001214 [ SET dom ]
InterPro: IPR022755 [ Znf C2H2 jaz ]
InterPro: IPR007087 [ Znf C2H2 ]
Pfam: PF00096 [ zf-C2H2 ]
Pfam: PF12171 [ zf-C2H2 jaz ]
PIRSF: PIRSF037162 [ PRDM ]
PROSITE: PS50280 [ SET ]
PROSITE: PS50157 [ ZINC FINGER C2H2 2 ]
PROSITE: PS00028 [ ZINC FINGER C2H2 1 ]
SMART: SM00317 [ SET ]
SMART: SM00355 [ ZnF C2H2 ]
Genome annotation databases
Ensembl: Transcript: ENST00000264808;  Protein: ENSP00000264808;  Gene: ENSG00000138738.
Ensembl: Transcript: ENST00000428209;  Protein: ENSP00000404832;  Gene: ENSG00000138738.
Ensembl: Transcript: ENST00000394435;  Protein: ENSP00000377955;  Gene: ENSG00000138738.
Ensembl: Transcript: ENST00000515109;  Protein: ENSP00000422309;  Gene: ENSG00000138738.
Ensembl: Transcript: ENST00000502409;  Protein: ENSP00000424861;  Gene: ENSG00000138738.
KEGG: hsa:11107
UCSC: uc003idp.1
UCSC: uc003idn.3
UCSC: uc003ido.3
Organism-specific databases
MGI: MGI:1918029 [ Prdm5 ]
PTM databases
PhosphoSite: Q9NQX1
Phylogenomic databases
eggNOG: COG5048
HOGENOM: HOG000234617
HOVERGEN: HBG098380
InParanoid: Q9NQX1
OMA: LGCKEDY
OrthoDB: EOG7KSX7Q
PhylomeDB: Q9NQX1
Sequence databases
CCDS: CCDS3716.1 [ Q9NQX1-1 ]
EMBL: mRNA:  AK056352 . Translation:  BAG51686.1 .
EMBL: Genomic DNA:  AC104795 . No translation available.
EMBL: mRNA:  BC121037 . Translation:  AAI21038.1 .
EMBL: mRNA:  BC121038 . Translation:  AAI21039.1 .
EMBL: Genomic DNA:  AC104068 . No translation available.
EMBL: mRNA:  AF272897 . Translation:  AAF78077.1 .
EMBL: Genomic DNA:  AC025741 . No translation available.
EMBL: mRNA:  BC066942 . Translation:  AAH66942.1 .
IPI: IPI00744738
IPI: IPI00914659
IPI: IPI00032997
RefSeq: Protein:  NP_061169.2. Nucleotide sequence:  NM_018699.2.
RefSeq: Protein:  XP_005262763.1. Nucleotide sequence:  XM_005262706.1.
UniProtKB: Q9NQX1 [ PRDM5 ]