LHX6 - LIM/homeobox protein Lhx6 - human protein (Sequence)
 
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LHX6 »  LIM/homeobox protein Lhx6  (LIM homeobox protein 6)
 
Protein also known as:  LIM/homeobox protein Lhx6.1.
Gene name:  LHX6
Entry whose protein(s) existence is based on evidence at transcript level
extend overview
1 20 6
GENE REF ISO

Displayed isoform: Iso 1     

 
 
Isoform Iso 1   363 aaMass: 40045 Da,  pI: 8.77
MAQPGSGCKA TTRCLEGTAP PAMAQSDAEA LAGALDKDEG QASPCTPSTP SVCSPPSAAS SVPSAGKNIC SSCGLEILDR YLLKVNNLIW HVRCLECSVC RTSLRQQNSC YIKNKEIFCK MDYFSRFGTK CARCGRQIYA SDWVRRARGN AYHLACFACF SCKRQLSTGE EFGLVEEKVL CRIHYDTMIE NLKRAAENGN GLTLEGAVPS EQDSQPKPAK RARTSFTAEQ LQVMQAQFAQ DNNPDAQTLQ KLADMTGLSR RVIQVWFQNC RARHKKHTPQ HPVPPSGAPP SRLPSALSDD IHYTPFSSPE RARMVTLHGY IESQVQCGQV HCRLPYTAPP VHLKADMDGP LSNRGEKVIL FQY

Sequence

 show evidences
Sequence caution 
The sequence AAI03937 differs from that shown. Reason: erroneous initiation.Translation N-terminally extended.  
  • CuratedUniProtKB
The sequence AAI03938 differs from that shown. Reason: erroneous initiation.Translation N-terminally extended.  
  • CuratedUniProtKB
The sequence CAB66505 differs from that shown. Reason: erroneous initiation.Translation N-terminally extended.  
  • CuratedUniProtKB
 

Keywords

Coding sequence diversity 
Alternative splicing  definition   [KW-0025]
Domain 
Homeobox  definition   [KW-0371]
LIM domain  definition   [KW-0440]
Repeat  definition   [KW-0677]
Technical term 
Reference proteome  definition   [KW-1185]
 

Further external links

Family and domain databases
Gene3D: 1.10.10.60
Gene3D: 2.10.110.10
InterPro: IPR009057 [ Homeodomain-like ]
InterPro: IPR017970 [ Homeobox CS ]
InterPro: IPR001356 [ Homeobox dom ]
InterPro: IPR001781 [ Znf LIM ]
Pfam: PF00412 [ LIM ]
Pfam: PF00046 [ Homeobox ]
PROSITE: PS50023 [ LIM DOMAIN 2 ]
PROSITE: PS00027 [ HOMEOBOX 1 ]
PROSITE: PS00478 [ LIM DOMAIN 1 ]
PROSITE: PS50071 [ HOMEOBOX 2 ]
SMART: SM00132 [ LIM ]
SMART: SM00389 [ HOX ]
SUPFAM: SSF46689 [ SSF46689 ]
Genome annotation databases
Ensembl: Transcript: ENST00000373755;  Protein: ENSP00000362860;  Gene: ENSG00000106852.
Ensembl: Transcript: ENST00000373754;  Protein: ENSP00000362859;  Gene: ENSG00000106852.
Ensembl: Transcript: ENST00000340587;  Protein: ENSP00000340137;  Gene: ENSG00000106852.
Ensembl: Transcript: ENST00000394319;  Protein: ENSP00000377854;  Gene: ENSG00000106852.
Ensembl: Transcript: ENST00000541397;  Protein: ENSP00000441464;  Gene: ENSG00000106852.
Ensembl: Transcript: ENST00000464484;  Protein: ENSP00000452811;  Gene: ENSG00000106852.
Ensembl: Transcript: ENST00000482062;  Protein: ENSP00000453798;  Gene: ENSG00000106852.
Ensembl: Transcript: ENST00000560485;  Protein: ENSP00000453606;  Gene: ENSG00000106852.
Ensembl: Transcript: ENST00000559895;  Protein: ENSP00000475927;  Gene: ENSG00000106852.
KEGG: hsa:26468
UCSC: uc004blx.4
UCSC: uc004bly.4
UCSC: uc010mvw.3
UCSC: uc022bmx.1
Organism-specific databases
MGI: MGI:1306803 [ Lhx6 ]
Phylogenomic databases
eggNOG: NOG264882
HOGENOM: HOG000038965
HOVERGEN: HBG006261
InParanoid: Q9UPM6
KO: K09375
OMA: LSEDIHY
OrthoDB: EOG744T9J
PhylomeDB: Q9UPM6
Sequence databases
CCDS: CCDS59144.1 [ Q9UPM6-6 ]
CCDS: CCDS56584.1 [ Q9UPM6-5 ]
CCDS: CCDS6838.2 [ Q9UPM6-3 ]
CCDS: CCDS6837.2 [ Q9UPM6-4 ]
CCDS: CCDS56583.1 [ Q9UPM6-1 ]
EMBL: mRNA:  AB031041 . Translation:  BAA83422.1 .
EMBL: Genomic DNA:  CH471090 . Translation:  EAW87516.1 .
EMBL: Genomic DNA:  CH471090 . Translation:  EAW87515.1 .
EMBL: mRNA:  AB031042 . Translation:  BAA83423.1 .
EMBL: mRNA:  AL136570 . Translation:  CAB66505.1 . Different initiation.
EMBL: mRNA:  BC103937 . Translation:  AAI03938.1 . Different initiation.
EMBL: Genomic DNA:  AL162424 . Translation:  CAI14704.1 .
EMBL: Genomic DNA:  AL162424 . Translation:  CAO03566.1 .
EMBL: mRNA:  BC103936 . Translation:  AAI03937.1 . Different initiation.
EMBL: mRNA:  AK297175 . Translation:  BAH12516.1 .
EMBL: Genomic DNA:  AL162424 . Translation:  CAO03565.1 .
EMBL: mRNA:  AK313808 . Translation:  BAG36544.1 .
EMBL: mRNA:  AK289827 . Translation:  BAF82516.1 .
EMBL: Genomic DNA:  AL162424 . Translation:  CAI14703.1 .
EMBL: mRNA:  AK126982 . No translation available.
EMBL: mRNA:  AK299709 . Translation:  BAH13108.1 .
IPI: IPI00294419
IPI: IPI00513787
IPI: IPI00853518
IPI: IPI00852614
PIR: T46907
RefSeq: Protein:  NP_954629.2. Nucleotide sequence:  NM_199160.3.
RefSeq: Protein:  NP_055183.2. Nucleotide sequence:  NM_014368.4.
RefSeq: Protein:  NP_001229262.1. Nucleotide sequence:  NM_001242333.1.
RefSeq: Protein:  NP_001229263.1. Nucleotide sequence:  NM_001242334.1.
RefSeq: Protein:  NP_001229264.1. Nucleotide sequence:  NM_001242335.1.
UniProtKB: Q9UPM6
Protocols and materials databases
DNASU: 26468